| 00 |
GWAS pre-processing |
Format GWASs for use with LAVA and LDSC |
| 01 |
Preparing inputs for LAVA with GWAS traits |
Prepare inputs required to run LAVA with GWAS traits i.e. loci and sample overlaps |
| 02 |
LAVA with GWAS traits |
Run univariate and bivariate tests with GWAS traits |
| 03 |
LAVA partial correlations/multiple regression |
Follow-up analysis on univariate/bivariate analysis of GWAS traits using partial correlations and multiple regression |
| 04 |
LAVA with eQTL and GWAS traits |
Run univariate and bivariate analyses using eQTL and GWAS traits |
| 05 |
LAVA using AD/PD GWASs without by-proxy cases |
Determine the impact of excluding by-proxy cases on AD-LBD and LBD-PD local rg |
| 99 |
Manuscript figures |
Generate figures for manuscript |